########################################
# Program: needle
# Rundate: Thu 11 Feb 2016 07:01:26
# Commandline: needle
#    -auto
#    -stdout
#    -asequence emboss_needle-I20160211-070125-0043-38438591-oy.asequence
#    -bsequence emboss_needle-I20160211-070125-0043-38438591-oy.bsequence
#    -datafile EDNAFULL
#    -gapopen 10.0
#    -gapextend 0.5
#    -endopen 10.0
#    -endextend 0.5
#    -aformat3 pair
#    -snucleotide1
#    -snucleotide2
# Align_format: pair
# Report_file: stdout
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: KP113548.1
# 2: 2976
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 389
# Identity:     321/389 (82.5%)
# Similarity:   321/389 (82.5%)
# Gaps:          41/389 (10.5%)
# Score: 1506.0
# 
#
#=======================================

KP113548.1         1 GCTCGTACCAAGCAGACNGCACGTAAATCTACTGGGGGGAAGGCCCCNAG     50
                                                |||||.||.||.|||||||| ||
2976               1 ---------------------------tcTACCGGagGCAAGGCCCCCAG     23

KP113548.1        51 GAAGCAGCTGGCCACCAAGGCAGCTCGCAAGAGRGCCCCAGCKACTGGTG    100
                     ||||||||||||||||||||||||||||||||| |||||||| |||||||
2976              24 GAaGCAGCTGGCCACCAAGGCAGCTCGCAAGAGTGCCCCAGCAACTGGTG     73

KP113548.1       101 GTGTCAAGAAGCCCCATCGTTACAGGCCTGGCACAGTGGCTCTCCGTGAG    150
                     |.||.||||||||||||||||||||||||||||||||.|||||.||||||
2976              74 GAGTGAAGAAGCCCCATCGTTACAGGCCTGGCACAGTTGCTCTGCGTGAG    123

KP113548.1       151 ATCCGTCGTTACCAGAAGAGCACCGAGCTGCTGATCAGGAAGCTGCCCTT    200
                     |||||||||||||||||||||||.||||||||||||.|.||||||||.||
2976             124 ATCCGTCGTTACCAGAAGAGCACAGAGCTGCTGATCCGCAAGCTGCCATT    173

KP113548.1       201 CCAGCGTCTGGTCCGTGAGATCGCCCAGGACTTCAAGACTGACCTGCGCT    250
                     ||||||||||||.|||||||||||||||||||||||||||||||||||||
2976             174 CCAGCGTCTGGTGCGTGAGATCGCCCAGGACTTCAAGACTGACCTGCGCT    223

KP113548.1       251 TCCAGAGCTCCGCCGTCATGGCCCTGCAGGAGGCTAGCGAGGCCTACCTG    300
                     ||||||||||.||.||||||||..|||||||||||||||||||.||||||
2976             224 TCCAGAGCTCTGCTGTCATGGCTTTGCAGGAGGCTAGCGAGGCTTACCTG    273

KP113548.1       301 GTCGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGT    350
                     ||.||.||||||||||||||||||.|||||||||||||.|||||||||||
2976             274 GTTGGCCTGTTCGAGGACACCAACTTGTGCGCCATCCACGCCAAGCGTGT    323

KP113548.1       351 CACNATNATGCCNAAGGATATGTCA--------------    375
                     ||| || ||||| ||||||||||||              
2976             324 CACtATtATGCCyAAGGATATGTCATAGCTGTTTCCdga    362


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